Thermodynamics is the study of macroscopic behaviour, and in particular to your example, by employing an approach known as statistical mechanics. Essentially you are considering the total number of microstates in a system, and assigning a probability to that particular microstate. You are corect to say that there exist a situation whereby all the energy is in the pendulum albeit a low probability. However, entropy denoted by S, is the SUM of all the product of the probabilities of all microstate and its natural logarithm, mathematically S=-k sigma( p ln p ). where p is the probability of each individual microstates. Hence what you have done is only considering one of the possible microstates and the summation explains where all your "missing" entropy has gone.
On a side note, I happen to be quite informed about developments in this field. Currently, there are about 3-4main planet search groups out there, one based primarily in the california region, led by Prof. Geoff Marcy from UC Berkeley who has discovered the most no. of planets and is also the discoverer of 51 peg B, the first extrasolar planet found. They do not take photographic plates to detect planets in general. However they do take precise measurement of the parent stars radial velocity as well as photometric analysis using the keck interferometers. Direct imaging of planets has only been done recently using the VLT on 2M1207b and GQ lupi b, but it is worth ot note these systems are extremely hard to come by. Many amateurs are indeed contributing to the discovery of extrasolar planets by collecting photometric results, you do not need to send a telescope in space or have very "powerful telescopes" to participate in the search. A commercial grade CCD or photon-meter with a regular 5" newtonian will do fine. (probably an 8 " for catadioptrics, wat most would have here at singastro). Furthermore it is also exactly because these professional astronomers have no time to collect and proccess these data that they "outsource" such stuff to amateursBut do you use such powerful telescopes? Or do you have time to study thousands of photos to discover a planet? In order to get accurate data, telescopes have to be sent to space as the atmosphere of the earth will distort light coming into the earth.